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EPD viewer for A. mellifera (Apr 2011 Amel_4.5/amel5), version 001

The EPD viewer for A. mellifera is made of the tracks given in the table below. The genome sequence track is provided by the EPD team (sequence was downloaded here). Note that when strand is n/a, it means that signal applies to both strands.

UCSC track name Track description Track resolution [bp] Strand Original dataset Raw format Tissue Stage/Time point Condition MGA series name PMID
1 All CAGE (+) 5′ end of CAGE reads 1 + GSM1568470, GSM1568471 SRA n/a n/a n/akhamis15 26073445
2 All CAGE (-) 5′ end of CAGE reads 1 GSM1568470, GSM1568471 SRA n/a n/a n/akhamis15 26073445
3 EPDnew promoters EPDnew promoters v. 001 1a n/ab n/a n/a n/a n/a n/aepd 23193273
4 RefSeq genes RefSeq gene annotation 1 n/a ftp.ncbi.n... GFF n/a n/a n/an/a 22121212
athe thick part represents the TSS plus the 10 bp downstream while the thin part represents the 49 bp upstream of the TSS
bpromoters on the + and − strands are combined in a single track, with promoter orientation defined by the position of the thick part relative to the thin part

These tracks are available at UCSC as a public hub named "EPD Viewer Hub".

Last update October 2019